Software

Software

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Software developed within the context of the projects I have been involved and students I have supervised.

 

 

1999, Win4RasMol

URL: http://www.accefyn.org.co/agc/rasagc/rasagc.zip

The main aim of this software is to hide the complexity of the command line interface in RASMOL by offering the user a set of windows menus that facilitate the manipulation of those molecules being viewed. This is no longer maintained. 


 

2004, GPIPE

URL http://www.pasteur.fr/recherche/unites/sis/Pise/

This is a workflow enactor for the Pasteur Institute Software Environment (PISE). It allows the definition of workflows over EMBOSS. No longer maintained. 


 

2006, Laboratory Information Management System

Not publicly available

Developed between CIAT and Parquesoft. 


 

2007 DASTY2

URL: http://www.ebi.ac.uk/dasty/

This is a protein annotation viewer. It offers the users several views of protein annotations. 


 

2007 ONTODAS

URL: http://ontodas.nbn.ac.za/

This is a Gene Ontology-based query builder for the Distributed Annotation System (DAS)


 

2007 MAP2OWL

URL: http://map2owl.sourceforge.net/

Protégé plug-in. It allows the generation of Ontologies as concept maps


 

2008 The Living Document. Elsevier Grand Challenge semi-finalist.

URL: http://190.158.253.249:8080/LDProject/web/index.html

The Living Document (LD) is not one that is constantly being written, as in the wiki approach, but one that acts as an interconnection bus networking documents, by means of structured organized social tagging and existing ontologies. 


 

2009 OLS2OWL

URL: http://ols2owl.sourceforge.net

Protege plug-in. It facilitates managing ontology repositories via Protege.